Translational and Therapeutic Research in Pancreatic Cancer

Luminy

Translational and Therapeutic Research in Pancreatic Cancer

Luminy

Team Leader

Team Leader

Our team focuses on the molecular aspects of pancreatic cancer initiation and progression in order to improve currently available therapeutic approaches.

Pancreatic cancer is one of the leading causes of cancer deaths worldwide. In 2020, some 466,000 people died from it. Despite advances in research, the prognosis remains bleak, with a five-year net survival of around 11% for cases diagnosed between 2010 and 2015. This high case-fatality rate is explained by the often late diagnosis, limited treatment options, aggressive nature and notable resistance to chemotherapy. In addition, significant heterogeneity is observed among patients, resulting from varied genetic mutations, complex interactions with the tumor microenvironment and selection pressure leading to clonal expansion.

Our team focuses on the molecular aspects of pancreatic cancer development and progression in order to improve current therapeutic approaches. Our research focuses on three main areas:

  1. Signaling and metabolism: studying NUPR1 targeting for the treatment of PDAC (Juan Iovanna and Patricia Santofimia-Castaño).
  2. Dialogues between adhesion molecules in pancreatic cancer: studying the expression profile of cadherins and their role in tumor invasion (Frédéric André and Véronique Rigot).
  3. Translational research: investigating the development of personalized treatments for PDAC (Nelson Dusetti and Juan Iovanna), the role of abnormal glycosylation processes in PDAC progression (Eric Mas), the role of post-translational modifications (PTMs) in PDAC biology and resistance mechanisms (Philippe Soubeyran), and the targeting of resistant PDAC phenotypes (Nicolas Frauhoffer).

The projects

Targeting NUPR1 to treat pancreatic cancer
image by Juan Iovanna Team Manager

TEAM LEADER

Juan Iovanna

image by Patricia Santofimia Castaño

Project Leader

Patricia Santofimia Castaño

Project members :

Matias Estaras
Post-doctoral researcher

Emma Cosialls
Post-doctoral researcher

Mohamed Gasmi
Hospital Practitioner

Laetitia Dahan
Hospital Practitioner

Emmanuelle Norguet
Hospital Practitioner

Fabrice Cayol
Hospital Practitioner

Bruno Olivier
Technician

Vincent Moutardier
Hospital Practitioner

Manon Tremouilloux
Master 2 student

Jing Wu
PhD Student

Anass Berkachi
Master student 2

NUPR1, an intrinsically disordered nuclear protein (IDP), plays a crucial role in pancreatic cancer (PDAC) and other types of cancer. NUPR1 plays a crucial role in regulating tumor growth, and its genetic inactivation results in a complete halt to tumor development. Due to the unique structural characteristics of intrinsically disordered proteins, the development of specific inhibitors for NUPR1 remains a major challenge.

Our team is tackling this problem using innovative, multidisciplinary approaches. Our research has led to the discovery of ZZW-115, a potent anticancer compound tested in vitro and in vivo. Using ZZW-115, we observed dose-dependent tumor regression in xenograft mice, with no apparent side effects. Our cellular analyses revealed that ZZW-115 induced necroptosis, apoptosis and ferroptosis in response to mitochondrial destabilization, highlighting its therapeutic potential.

Our most recent results show that ZZW-115 inhibits the formation of NUPR1-dependent stress granules, thereby slowing the progression of pancreatic intraepithelial neoplasia (PanINs) in mice carrying the oncogenic KrasG12D mutation. This inhibition led to cell death, caspase 3 activation, DNA fragmentation and the formation of apoptotic bodies after four weeks' treatment.

Our team continues to explore these mechanisms to offer new therapeutic perspectives in the fight against NUPR1-dependent cancers.

Ongoing research is focusing on ZZW-115's mechanism of action, NUPR1's molecular partners, its synergy with DNA-damaging agents and regulatory preclinical studies. The ZZW-115 compound has been granted patent protection, and a start-up company (PanCa Therapeutics) has been set up to take it into clinical trials.

Study of cadherin dialogues during the invasion/metastasis cascade in pancreatic cancer
image by Frédéric André Project Manager

PROJECT LEADER

Frédéric André

image by veronique Rigot

PROJECT LEADER

Véronique Rigot

Project members :

Rénaté Bonier
Technician

Sébastien Germain
Technician

Amandine Lopez
PhD Student

Philippe Guigue
Engineer

Cadherin expression fluctuates during the invasion-metastasis cascade. We have shown that their expression profile varies with PDAC aggressiveness. We are developing 3 related projects

  • 1. We determine a "Cadherin" signature corresponding to the expression profile of cadherins in relation to an invagram (3D invasiveness of tumor cells, ability to form invadopodia, etc.). The aim of this approach is to predict the aggressiveness of PDAC, enabling personalized patient follow-up.
  • 2. We have identified a cadherin whose high expression is associated with a very poor prognosis in patients. We are trying to understand its functional involvement in tumor aggressiveness. Therapeutic and prognostic tools targeting this molecule are currently under development.
  • 3. We are attempting to characterize whether the nature of the cadherins expressed by tumor cells has a qualitative and quantitative impact on the composition of the extracellular matrix.
  • The expression profile and localization of cadherins are modulated during PDAC progression. We analyze the involvement of different cadherins in the invasion/metastasis cascade. Our objectives are to define a cadherin signature that accounts for the aggressiveness of PDAC and to develop a therapeutic target for at least one of them.

    E-Cadherin translational research team project - CRCM

    E-cadherin is a structuring component of invadopodia (A, B, C, D)

Sensitivity prediction and personalized therapy for pancreatic cancer
image by Nelson Dusetti Team Manager

Team Leader

Nelson Dusetti

Project members :

Odile Gayet
Engineer

Julie Aglietti Roques
Assistant-Ingineer

Loïc Moubri
Engineer

Pauline Duconseil
Hospital Practitioner

Brice Chanez
Hospital Practitioner

Marion Rubis
Assistant-Ingineer

Charles Vambrugghe
Hospital Practitioner

Flora Poizat
Hospital Practitioner

Alex Chauvin
Post-doctoral researcher

Clémentine Gaucher
Master 2 Student

Pauline Moussard
Engineer

Jeremy Ariey Bonnet
Post-doctoral researcher

Olivier Castellanet
Researcher

In this project, we are developing advanced tools for the personalization of pancreatic cancer treatments (PDAC), focusing on the prediction of sensitivity to therapies. We have designed Pancreas-View, a predictive test to identify patient sensitivity to first-line treatments such as FOLFIRINOX and GEM-Abraxane. This test optimizes the choice of therapies, minimizing toxicity and maximizing efficacy.

In addition, our team explores molecular heterogeneity and evolution towards treatment resistance using single cell approaches and spatial molecular biology analyses. We study treatment-induced transitions to resistant phenotypes, contributing to cancer recurrence and progression. Using spatial transcriptomics and transcriptomic deconvolution techniques, we identify resistant subpopulations and their complex interactions with the tumor microenvironment. This in-depth understanding enables us to tailor therapies to tumors' evolutionary profiles, and paves the way for clinical trials of therapeutic combinations targeting resistant cells.

Finally, we are actively collaborating with partners to validate our biomarkers and predictive signatures in clinical cohorts, offering the prospect of greater personalization and thus transforming the management of PDAC.

We have validated the efficacy of these signatures in several retrospective studies, and our current work focuses on their clinical validation in prospective cohorts. The Pancreas-View algorithm, protected by a patent, has given rise to a start-up company, Predicting Med, created to ensure its industrial development. This initiative aims to integrate this innovative tool into routine clinical practice, in order to improve the management of pancreatic cancers.

Targeting resistant phenotypes in pancreatic cancer
image by Juan Iovanna Team Manager

PROJECT LEADER

Nicolas Fraunhoffer

Project members :

Vladimir Chocoloff
PhD Student

The identification of resistant phenotypes in PDAC has revealed a multitude of molecules specifically modulated under these conditions. These molecules represent potential therapeutic targets as well as new biomarkers to better understand and counter treatment resistance.

This project aims to explore these markers in detail using advanced preclinical models, such as patient-derived cell cultures (PDC), organoids (PDO) and human tumor-derived xenografts (PDX). By combining cutting-edge techniques such as CRISPR-Cas9 to specifically inhibit genes associated with chemoresistance, and epigenomic approaches to modulate their expression, we hope to transform resistant cells into susceptible ones.

In addition, spatial and single-cell transcriptomic analyses identify the complex interactions between tumor epithelial cells and the tumor microenvironment (CAF, immune cells) in a treatment context. These analyses provide tools for predicting treatment responses and target specific cell subpopulations.

By adopting this multidisciplinary approach, our aim is to develop innovative therapeutic strategies capable of overcoming tumor resistance, thereby improving the efficacy of chemotherapies and opening up new perspectives for the management of PDAC.

Alterations of Ubiquitin-type Post-Translational Modifications (PTMs) and resistance to treatments of pancreatic adenocarcinoma.

PROJECT LEADER

Philippe Soubeyran

Project members :

Dinah Ratovonindrina
PhD Student

Micaela Carolina Escalada
PhD Student

Lilou Magnabosco
Master student 1

Ubiquitin-like post-translational modifications (ubiquitin and related proteins such as SUMOs and Nedd8) regulate the functions of all cellular proteins and are therefore involved in most of a cell's biological processes. Alterations in this type of TPM may be involved in oncogenic processes and be responsible for resistance mechanisms enabling the cancer cell to survive various anti-cancer treatments.

Our goal is to identify these pancreatic cancer-associated alterations for use as markers of chemoresistance and as novel molecular targets for re-sensitization. Thus, restoring normal TPM of some of these targets has the potential to restore the sensitivity of pancreatic cancer cells to conventional therapies, thereby increasing their efficacy and hence patient survival.

Role of abnormal glycosylation processes in PDAC progression and treatment resistance
Eric Mas - Research Director

PROJECT LEADER

Eric Mas

Project members :
Photo not available - Françoise Silvy

Françoise Silvy
Assistant-Ingineer

Photo not available - Sarah Belaid

Sarah Belaid
Master 2 Student

One of the main causes of PDAC resistance to treatment is the considerable genotypic and phenotypic variability between patient tumors, which involves a variety of complex molecular mechanisms. These include glycosylation processes, which are responsible for the appearance of abnormal glycosylated structures whose expression varies between patient tumors.
These structures can be generated on glycoproteins and glycosphingolipids as a result of, among other things, profound alterations in the expression of glycosylation enzymes such as glycosyltransferases. These aberrant glycans thus make a major contribution to tumor heterogeneity and may participate in malignant transformation, tumor progression and metastatic dissemination.
We have recently shown that some of these glyco-genes can be correlated with the sensitivity or resistance of tumor cells to various therapeutic molecules.

Our project therefore aims to characterize the molecular and clinical impact of these glycosyltransferases and the aberrant glycans they produce. The aim is to determine their potential as histological glyco-biomarkers predictive of response to treatment. We are also exploring their role in the molecular mechanisms involved both in tumor progression and in modulating sensitivity or resistance to chemotherapies.

Team news

featured publications

09/2024

Fraunhoffer N, Hammel P, Conroy T, Nicolle R, Bachet JB, Harlé A, Rebours V, Turpin A, Ben Abdelghani M, Mitry E, Biagi J, Chanez B, Bigonnet M, Lopez A, Evesque L, Lecomte T, Assenat E, Bouché O, Renouf DJ, Lambert A, Monard L, Mauduit M, Cros J, Iovanna J, Dusetti N.

03/2024

Santofimia-Castaño P, Fraunhoffer N, Liu X, Bessone IF, di Magliano MP, Audebert S, Camoin L, Estaras M, Brenière M, Modesti M, Lomberk G, Urrutia R, Soubeyran P, Neira JL, Iovanna J.

03/2023

Fraunhoffer N, Chanez B, Teyssedou C; Pdac Chemo Sensitivity Prediction Working Group; Iovanna JL, Mitry E, Dusetti NJ.

08/2022

Fraunhoffer NA, Abuelafia AM, Bigonnet M, Gayet O, Roques J, Nicolle R, Lomberk G, Urrutia R, Dusetti N, Iovanna J.

05/2021

Cano CE, José Sandí M, Hamidi T, Calvo EL, Turrini O, Bartholin L, Loncle C, Secq V, Garcia S, Lomberk G, Kroemer G, Urrutia R, Iovanna JL.

02/2021

Nicolle R, Gayet O, Duconseil P, Vanbrugghe C, Roques J, Bigonnet M, Blum Y, Elarouci N, Armenoult L, Ayadi M, de Reyniès A, Puleo F, Augustin J, Emile JF, Svrcek M, Arsenijevic T, Hammel P, Giovannini M, Grandval P, Dahan L, Moutardier V, Gilabert M, Van Laethem JL, Bachet JB, Cros J, Iovanna J, Dusetti NJ.

Labels, Funding and Partners

Alumni

Like others, they were part of the team.
Thank you to all those who have contributed to CRCM's excellence and impact.

Leila EL Mohajer
PhD Dusetti
Today technical manager
Immusmol - Bordeaux, Nouvelle-Aquitaine, France
Abdessamad El Kaoutari
Post Doctoral Candidate Dusetti
Today Scientific Researcher
CRCM
Sylvain Peuget
PhD Dusetti
Today Assistant Professor
Karolinska Institutet Greater
Stockholm Metropolitan Area
Martin Bigonnet
Engineer CDD Dusetti
Today biological engineer
VECT-HORUS S.A.S. Marseille
Benjamin Bian
Post Doctorant Dusetti
Today research engineer
IPMC Sophia-Antipolis - IPMC CNRS-U. NICE SOPHIA
Greater Stockholm Metropolitan Area
Tewfik Hamidi
PhD Juan Iovanna
Today Senior Research Associate
OHSU School of Medicine Portland
Oregon Metropolitan Area
Daniel Grasso
Post-doctoral student Juan Iovanna
Now a researcher at CONICET, team leader
CONICET Argentina
Carla Cano
Post-doctoral student Juan Iovanna
Now project manager
Immcheck Marseille
Aurélie Dobric
PhD Student Frederci Andre
Today research fellow
UCL Cancer Institute London
England, United Kingdom
Thomas Bonacci
PhD Student Philippe Soubeyran
Today Assistant Professor, Pharmacology
University North Carolina
Yousra Mohamed Abd-El-Halim
PhD Student Eric Mas
Today Technology Transfer & Operational Marketing Manager
Digital Health and Life Sciences
SATT Sud-Est Marseille
Wenjun Lan
PhD Student Juan Iovanna
Today postdoctoral Research Fellow
Cold Spring Harbor Laboratory Tuveson's lab
Jonathan Garnier
Master student Nelson Dusetti
Today pancreatic surgery fellowship
NYU Langone Health NYU Manhattan, New York, USA

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