Integrative molecular biology in hematopoiesis and leukemia

Paoli Calmettes Institute

Integrative molecular biology in hematopoiesis and leukemia

Paoli Calmettes Institute

Team Leader

The Laboratory for Integrative Molecular Biology in Hematopoiesis and Leukemia deciphers the molecular mechanisms involved in the aging of hematopoietic stem cells, the initiation and development of leukemia and resistance to treatment.

Our main objective is to discover the molecular networks involved in regulating the fate of normal or pathological hematopoietic cells, which may represent vulnerabilities to be targeted.

Using mouse and cell models as well as patient samples, we integrate data from biochemical, epigenomic and omic approaches at the single-cell level to identify, characterize and manipulate key oncogenic pathways.

We work mainly on :

  • Acute myeloid leukemia and the accutisation of myeloproliferative disorders (PI: E. Duprez).

  • Acute T-cell lymphocytic leukemia (PI: D. Payet).

The projects

Theme 1: Mechanisms of hematopoietic aging

The hematopoietic system deteriorates with age, and numerous changes have been observed in humans and mice, including a reduction in the production of red blood cells and lymphocytes, and a relative increase in the production of myeloid cells.

The result is a reduction in the number of adaptive immune cells, favoring immune senescence and the development of myeloid disorders.

With the aim of understanding the impact of aging on the hematopoietic system, we are developing projects using mouse models and patient samples to :

  • Resolving hematopoietic stem cell heterogeneity and its evolution during aging.
  • Study the factors influencing this heterogeneity and their contribution to myeloid diseases.
Theme 2: Acute myeloid leukemia and treatment resistance

Acute myeloid leukemia (AML) is a serious hematological disease that occurs more frequently in the elderly. AML is highly heterogeneous at the molecular and cellular levels, and this heterogeneity contributes significantly to resistance to treatment.

In order to study the heterogeneity of AML and its evolution after treatment, we are developing transcriptomic and epigenomic analyses (in bulk and at the single-cell level) coupled with biochemical and PDX models.

We focus on epigenetically and/or genetically defined subgroups of AML to:

  • Study EZH2 activities (canonical and non-canonical) in response to therapy in different AML subgroups.
  • Characterize NPM-mut AML heterogeneity based on the  H3K27me3HIST1high  epigenetic biomarker. 
Theme 3: Physiological and pathological differentiation of T lymphocytes

T-acute lymphoblastic leukemia (T-ALL) results from the transformation of thymic progenitors blocked in their differentiation process. It is an aggressive hematological malignancy diagnosed in children and adults.

The prognosis of patients with T-ALL remains poor, particularly in cases of relapse/resistance. Our research aims to better understand the mechanisms of leukemogenesis and treatment resistance.

To achieve our goals we use "omics" approaches (scRNA-seq, exome-seq, ChIP-seq) to analyze :

  • mouse models mimicking human T-ALL, in which we study the oncogenic pathways underlying thymocyte neoplastic transformation.
  • human T-ALL samples to study intratumoral heterogeneity and characterize the subclones responsible for relapse

Team news

featured publications

12/2022

Poplineau M, Platet N, Mazuel A, Hérault L, N'Guyen L, Koide S, Nakajima-Takagi Y, Kuribayashi W, Carbuccia N, Haboub L, Vernerey J, Oshima M, Birnbaum D, Iwama A, Duprez E.

03/2022

Garciaz S, Guirguis AA, Müller S, Brown FC, Chan YC, Motazedian A, Rowe CL, Kuzich JA, Chan KL, Tran K, Smith L, MacPherson L, Liddicoat B, Lam EYN, Cañeque T, Burr ML, Litalien V, Pomilio G, Poplineau M, Duprez E, Dawson SJ, Ramm G, Cox AG, Brown KK, Huang DCS, Wei AH, McArthur K, Rodriguez R, Dawson MA.

05/2019

Poplineau M, Vernerey J, Platet N, N'guyen L, Hérault L, Esposito M, Saurin AJ, Guilouf C, Iwama A, Duprez E.

04/2018

Koubi M, Poplineau M, Vernerey J, N'Guyen L, Tiberi G, Garciaz S, El-Kaoutari A, Maqbool MA, Andrau JC, Guillouf C, Saurin AJ, Duprez E.

04/2016

Vincent-Fabert C, Platet N, Vandevelde A, Poplineau M, Koubi M, Finetti P, Tiberi G, Imbert AM, Bertucci F, Duprez E.

Labels, Funding and Partners

Alumni

Like others, they were part of the team.
Thank you to all those who have contributed to CRCM's excellence and impact.

Christelle Vincent-Fabert
Post-doctoral researcher
Currently Researcher, Centre de Biologie en Recherche Limoges
Guillaume Tiberi
Bioinfo engineer
Currently Bioinfo Python developer, consultant
Myriam Koubi
PhD
Currently Research Engineer, University of Tours
Bochra Zidi
PhD
Currently lecturer-researcher, University of Geneva
Sylvain Garciaz
PhD
Currently Senior Lecturer, Institut Paoli calmette
Julien Vernerey
Bioinfo Engineer
Currently Research Engineer, Cibi Platform, CRCM
Léonard Herault
PhD
Currently Post-doc University of Lausanne
Adrien Mazuel
Bioinfo engineer
Currently Research Engineer, CIML, Marseille
Clara Tellez
PhD
Claie Burny
Engineer

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