Genome Dynamics and Recombination

Paoli Calmettes Institute

Genome Dynamics and Recombination

Paoli Calmettes Institute

We study DNA repair by homologous recombination in mitotic and meiotic contexts, and seek to identify new factors that may influence this mechanism.

Genomes are dynamic structures, evolving not only through point mutations, but also through Gross Chromosomal Rearrangements (GCRs). At population level, these dynamics contribute to the evolution of the species, but at individual level, they are responsible for numerous diseases, including cancer. RGCs include chromosome arm translocations, as well as variations in the copy number of large chromosome segments. RGCs and point mutations are formed in part during the repair of DNA breaks by recombination between homologous sequences during mitosis and meiosis.

DNA recombination between homologous sequences is a repair mechanism for various DNA lesions, including double-strand breaks. We are studying this mechanism in detail in both mitotic and meiotic contexts, and are seeking to identify new factors that may influence it. To this end, we are combining molecular genetic and genomic approaches using budding yeasts such as the baker's yeast Saccharomyces cerevisiae and related species, as well as the mouse model.

Spread nuclei of Lachancea kluyveri cells arrested at the pachytene stage of meiotic prophase. In A, staining was performed with DAPI (blue), which marks chromatin, an anti-FLAG antibody against Rec8-FLAG (red), which marks the meiotic chromosome axis, an anti-Zip1 antibody (cyan), which marks the synaptonemal complex, and a ribosomal DNA-specific FISH probe (rDNA, green). The arrow points to two non-synapsed chromosome arms, assumed to be those of chromosome C. In B, staining was performed with DAPI (blue), FISH probes specific to the left arm (green) and right arm (red) of chromosome C, and ribosomal DNA (rDNA, white). The arrowhead points to the C chromosome. The structure of the C chromosome deduced from the staining experiments is drawn (scale not respected) to the right of panels A and B. Scale bars = 1 µm.

Spread chromosomes of mouse spermatocytes at the zygotene stage of meiotic prophase, showing the Y chromosome before recombination with the X chromosome at the PAR region. Top, labeling of the SYCP3 protein, a component of the chromosome axis. Bottom, FISH labeling of total Y chromosome DNA (blue) and the mo-2 minisatellite of the PAR region (green). This image illustrates the remarkable difference in the organization of Y chromosome chromatin between the region that does not recombine with the X chromosome (blue), with a short axis and long DNA loops, and the part that does recombine (PAR, green), with a long, thickened axis and very short DNA loops.

The projects

Regulation of recombination events involving a single DNA end

Our first line of research focuses on the regulation of recombination events involving a single DNA end. These events are known to generate chromosomal rearrangements (GCRs) and are particularly mutagenic.

Although these events are generally repressed, they can occur as a last resort to repair damaged DNA. They also play a key role in maintaining chromosome ends, known as telomeres, in a significant fraction of ALT cancers.

Regulation of recombination during meiosis

Our second line of research focuses on the regulation of recombination during meiosis, the cell division that generates gametes and is essential for sexual reproduction.

Meiotic recombination is part of a rigorously controlled cellular program. It plays a key role in the correct segregation of chromosomes and contributes to genetic mixing. Having studied in detail the dynamics of exchanges between DNA molecules during meiotic recombination, we now turn our attention to the impact of DNA polymorphism on the efficiency of this process.

DNA polymorphism, naturally present in populations, generates base mismatches during recombination. These mismatches are detected by a protein machinery that can either repair them or eliminate the recombination intermediates. This mechanism ensures efficient allelic recombination while preventing recombination between homologous non-allelic sequences, potential sources of chromosomal rearrangements (GCRs).

Study of meiotic recombination in budding yeasts related to S. cerevisiae

A third line of research focuses on the study of meiotic recombination in budding yeasts related to Saccharomyces cerevisiae.

We are particularly interested in an as-yet-unknown mechanism that inhibits meiotic recombination on the entire arm of the chromosome carrying the sex-type locus in the yeast Lachancea kluyveri.

This mechanism could shed new light on a pathway for the emergence of **sex chromosomes**, which are often characterized by a massive extinction of meiotic recombination.

Study of the regulation of recombination between sex chromosomes during male meiosis in mice

The laboratory's fourth theme is the regulation of recombination between sex chromosomes during male meiosis in the mouse. Unlike autosome pairs, the challenge for the X and Y chromosomes in male mammals is to recombine in their region of very limited homology, called pseudoautosomal region (PAR), to ensure their correct segregation at meiosis I.

To ensure this recombination, the mo-2 minisatellite present in the PAR and thehyperaccumulation of pro-recombination factors establish respectively a cis- and trans-regulation.

We aim to further characterize the proteome associated with PAR, to refine the characterization of its particular chromatin structure and to study its evolution since its associated minisatellite mo-2 probably favors rapid evolution.

Team news

There are no posts on the list.

featured publications

03/2024

Legrand S, Saifudeen A, Bordelet H, Vernerey J, Guille A, Bignaud A, Thierry A, Acquaviva L, Gaudin M, Sanchez A, Johnson D, Friedrich A, Schacherer J, Neale MJ, Borde V, Koszul R, Llorente B.

06/2022

Uribe-Calvillo T, Maestroni L, Marsolier MC, Khadaroo B, Arbiol C, Schott J, Llorente B.

04/2018

Marsolier-Kergoat MC, Khan MM, Schott J, Zhu X, Llorente B.

09/2012

Costelloe T, Louge R, Tomimatsu N, Mukherjee B, Martini E, Khadaroo B, Dubois K, Wiegant WW, Thierry A, Burma S, van Attikum H, Llorente B.

Alumni

Like others, they were part of the team.
Thank you to all those who have contributed to CRCM's excellence and impact.

Tutor of Sylvain Legrand
ANR postdoc
2015-2020 : PhD student, Aix-Marseille University
Tutor of Asma Saifudeen
PhD student, Aix-Marseille University
Defense: December 2023
present: postdoc Urzula McClurg lab, Poland
Co-tutor of Rakesh Aithal
ANR postdoc - present: staff scientist
industry, India
Co-tutor of Marie Dorme
PhD student, Aix-Marseille University
Defense: June 2022 - present: staff scientist, industry, France
Tutor of Tannia Uribe
PhD student, Aix-Marseille University
Defense: September 2021 - present: research engineer, AMU
Tutor of Muntaz Khan
Ligue Nationale Contre le Cancer postdoc
present: research engineer, CRCL
Tutor of Jonathan Schott
Master student 2 and half PhD, Aix-Marseille University
present: dentsit
Tutor of Raphaël Louge
Master student, Ecole Pratique des Hautes Etudes, Paris
present: staff scientist, industry, France
Tutor of Basheer Khadaroo
ATIP postdoc
present: high school teacher

Logo Aix Marseille université CRCM partenaires Logo Inserm partenaire CRCM CNRS logo partenaire CRCM Institut Paoli Calmettes unicancer Marseille CRCM