Integrative Structural and Chemical Biology

Institut Paoli Calmettes / La Timone

Structural Biology and Chemistry-Integrated Biology

Institut Paoli Calmettes / La Timone

Team Leader

Team Leader

Our objectives are to identify, understand, validate and target tumor cell signaling pathways.

Drug discovery is an inherently inefficient process, particularly in oncology. The challenge of matching the immensity and complexity of the chemical world to a physiological effect in clinical trials is unfortunately illustrated daily by limitations such as harmful side effects and drug resistance that defy the most potent chemotherapeutic agents available.

It has therefore become urgent to identify new therapeutic targets and develop approaches to propose and characterize a new generation of anti-cancer drugs. Most drug discovery initiatives by pharmaceutical companies concern the development and/or expansion of their preclinical and clinical pipelines, mainly targeting:

  • G protein-coupled receptors
  • Nuclear receptors
  • Ion channels
  • Active enzyme sites (e.g. kinases)

Although this strategy is perfectly understandable for historical and risk-management reasons, protein-protein interaction inhibitors represent a powerful, virtually untapped alternative and reservoir in oncology from which we can draw new sources to meet this 21st century challenge.

Our objectives are to identify, understand, validate and target tumor cell signaling pathways involving protein-protein interaction interfaces, with the specific aim of facilitating the transfer of identified therapeutic/pharmacological targets to preclinical and clinical development programs in oncology.

The projects

Epigenetics and bromodomain inhibitors
image by Xavier Morelli team leader

PROJECT MANAGER

Xavier Morelli

image of Yves Collette team leader

PROJECT MANAGER

Yves Collette

Project members :

Sébastien Combes

Stéphane Betzi

Philippe Roche

Carine Derviaux

Bromodomains (BDs) are small protein domains capable of recognizing chemical modifications of DNA responsible for regulating gene expression. Deregulation of these proteins, and in particular of the BET family, is implicated in the development of numerous diseases, particularly cancers. This family comprises 4 proteins, each with two bromodomains called BD1 and BD2.

Numerous small molecules targeting the bromodomains of the entire BET family have recently been described. These are known as Pan-BET inhibitors, but their use in clinical studies remains problematic, as they impact numerous transcription pathways, which can lead to the emergence of resistance phenomena.

The main aim of this research project is to develop selective inhibitors of the BD1 or BD2 subdomains, for use as chemical probes to study their respective roles, but also as potential drug candidates.

Structure based drug design

Small molecules in immunotherapy
image of Thomas Miller team leader

PROJECT MANAGER

Thomas Miller

Project members :

Xavier Morelli

Carine Derviaux

Philippe Roche

Stéphane Betzi

Yves Collette

Sébastien Combes

Sebastien Abel

Immune checkpoints are a class of protein-protein interactions (PPIs) that control the immune response and represent major targets for countering tumor-induced immunosuppression and tumor elimination.

Our team is leveraging its expertise in PPI inhibition to develop the next generation of small molecule immunotherapies.

Modulating the tumor immune microenvironment using small molecules offers advantages that are complementary to and potentially synergistic with the use of antibody and cellular therapies as well as conventional therapies (radiation and chemotherapy), including:

  • the potential for oral bioavailability
  • improved solid tumor penetration
  • the adaptability to combination therapies

Our goal is to develop novel small molecule-based immunotherapies using a hybrid multidisciplinary approach blending lead-like and fragment-based high-throughput screening (chemotype discovery) with structure-based and in silico guided drug design (chemotype evolution). In addition, we are developing novel in vitro models to better evaluate the complex mechanism of action of immunomodulatory small molecules and predict their in vivo activity.

As a proof of concept for our approach, we are developing novel small molecule inhibitors of the innate immune checkpoint SIRPα-CD47, a longstanding target of interest for our group. Our aim is to produce SIRPα-CD47 inhibitors with:

  • High selectivity for the tumor immune microenvironment
  • Low toxicity
  • High penetration
  • Enhanced anti-tumor activity compared with existing blocking antibodies
iSCB Team 2023
iSCB Team 2021
iSCB Team 2020
iSCB Team 2024
iSCB Team 2019
iSCB Team 2024

Molecular modeling tools

Team news

featured publications

05/2023

Saez-Ayala M, Hoffer L, Abel S, Ben Yaala K, Sicard B, Andrieu GP, Latiri M, Davison EK, Ciufolini MA, Brémond P, Rebuffet E, Roche P, Derviaux C, Voisset E, Montersino C, Castellano R, Collette Y, Asnafi V, Betzi S, Dubreuil P, Combes S, Morelli X.

07/2018

Hoffer L, Voitovich YV, Raux B, Carrasco K, Muller C, Fedorov AY, Derviaux C, Amouric A, Betzi S, Horvath D, Varnek A, Collette Y, Combes S, Roche P, Morelli X.

07/2024

Hoffer L, Charifi-Hoareau G, Barelier S, Betzi S, Miller T, Morelli X, Roche P.

06/2020

Bosc N, Muller C, Hoffer L, Lagorce D, Bourg S, Derviaux C, Gourdel ME, Rain JC, Miller TW, Villoutreix BO, Miteva MA, Bonnet P, Morelli X, Sperandio O, Roche P.

04/2022

Carrasco K, Montersino C, Derviaux C, Saez-Ayala M, Hoffer L, Restouin A, Castellano R, Casassa J, Roche P, Pasquier E, Combes S, Morelli X, Collette Y, Betzi S.

Labels, Funding and Partners

Alumni

Like others, they were part of the team.
Thank you to all those who have contributed to CRCM's excellence and impact.

Raphael Bourgeas
PhD
Currently Post-Doc, HTXLab, EMBL, Grenoble
Véronique Hamon
Post-doctoral researcher
Sabine Milhas
PhD
Currently Associate Director, Primary Pharmacology at Exscientia,
Oxford, England
Elsa Drivet
PhD
Currently Post-Doc, University of Oslo
Adrien Lugari
PhD
Currently Team and Product Manager,
Sartorius Stedim Biotech
Brigitt Raux
PhD
Currently Clinical Research Assistant, ARC
Etienne Rebuffet
Post-doctoral fellow
Iuliia Voitovich
PhD
Currently Post-Doc, Université Clermont Auvergne
Laurent Hoffer
Post-doctoral
Currently Post-Doc Computational Chemist,
Ontario Institute for Cancer Research, Canada
Karine Barral
Researcher
Currently Researcher, ICR, Equipe PCR, Marseille
Kendall Carrasco
PhD
Currently Post-Doc, IBS, Grenoble, France
Christophe Muller
Post-doctoral
Currently Senior Computational Chemist,
Evotec, Toulouse
Khaoula Ben-Yaala
PhD
Currently studying Pharmacy, AMU
Sebastien Abel
Post-doctoral
Currently Post-doctoral, ICR, Equipe SREP, Marseille
Marco Ciufolini
Researcher
Currently Professor Emeritus, UBC,
Vancouver, Canada

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